Annual Salaries, Record Keeping & Compliance: What Small Businesses need to know

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If you employ staff on an annual salary, recent Fair Work decisions have clarified some important changes — and they affect more small businesses than many realise.

The good news?
This isn’t about panic or drastic changes.
It is about understanding what’s expected now and making sure your systems protect your business moving forward.

Let’s break it down in plain English.


What’s changed?

Recent Federal Court cases involving large employers (including Woolworths and Coles) have clarified how annual salaries and award set-off clauses must work under the Fair Work Act.

The key takeaway is simple:

Each pay period must stand on its own.

You can no longer rely on paying “above award” in one pay period to make up for a shortfall in another.


What does that mean for annual salaries?

Previously, many businesses believed that as long as an employee’s salary was generous overall, it could “average out” across the year.

That approach is no longer acceptable.

Now:

  • Every pay run must cover what the employee would have earned under the award
  • Based on the actual hours worked in that pay period
  • Including overtime, penalties, and allowances

If the salary doesn’t fully cover it in a particular pay period, a top-up payment must be made immediately.


Are set-off clauses still allowed?

Yes — but with limits.

A set-off clause allows an annual salary to cover things like overtime and penalty rates.
However:

  • The salary must be high enough every pay period
  • Any shortfall must be identified and paid straight away
  • Employers must be able to prove this with records

A set-off clause does not remove the need for proper record keeping.


Record keeping: the biggest shift for many businesses

This is where expectations have tightened the most.

Employers must now keep accurate records showing:

  • Days worked
  • Start and finish times
  • Actual hours worked
  • Overtime hours
  • Penalty rates, loadings and allowances

Rosters or clock-in systems alone are not sufficient.

Payslips must also clearly show the employee’s annual salary rate.

Strong record keeping isn’t just a compliance requirement — it’s your best defence if your payroll is ever questioned.


What does this mean in practice?

Each pay period, you should be able to:

  1. Compare what the employee was paid
  2. Against what they would have earned under the award for those hours
  3. Confirm the salary covered it — or top up if required

Time off in lieu (TOIL) can still be used instead of overtime payments, but it must be agreed in writing and properly recorded.


What should small businesses do now?

Before EOFY, it’s a good idea to:

  • Review salaried employees and their hours
  • Check employment agreements and set-off clauses
  • Ensure time-keeping systems capture actual hours worked
  • Reassess salaries when award rates or work patterns change

This isn’t about creating extra admin — it’s about ensuring your business is protected and compliant as it grows.


How NBK Services can help

At NBK Services, we work proactively with our clients to:

  • Review payroll and salary structures
  • Strengthen record-keeping processes
  • Ensure compliance without overwhelm
  • Align payroll with strategic business planning

This is the Strategic Bookkeeper difference — combining compliance with clarity, planning and peace of mind.

If you’d like support reviewing your current arrangements or setting up compliant systems before these changes impact you, we’re here to help.

👉 Reach out to NBK Services to start the conversation.

Jennifer Van De Wouw
Founder & CEO
NBK Services Pty Ltd

Strategic bookkeeping | Payroll | Compliance | Planning & Strategy
📞 1300 914 330
🌐 www.nbkservices.com.au

Further Reading is recommended: In this blog we have attempted to break down and simplify some of these changes based on the Steadfast HR Newsflash Newsletter below and the Fairwork Ombudsmen Website.

Offsetting and record-keeping for salaried employees – Fair Work Ombudsman

Steadfast HR Newsflash – Award Set-off Clause and Record Keeping Changes – December 2025 article.docx